Hierarchical orthology matrix as calculated from the all vs. all orthology search across Set-R along the phylogenetic tree (OMA hierarchical orthologous groups, HOGs).

Sheet 1: The column header contains the labels of the NCBI RefSeq assembly accession of each genome. The second column (LCA) indicates the associated inner node of the HOG in the reconstructed phylogenetic tree. The values either refer to the node label on the lineage of A. baumannii or, if the node is not on the lineage, an incremental node id. The corresponding nodes together with summary statistics are provided in S9 Fig. Row indices refer to the hierarchical orthologous group ID. The matrix fields contain the NCBI RefSeq protein sequence accession if an ortholog was identified otherwise they are left empty. Sheet 2 lists the identifiers of HOGs with prevalence in at least 231 genomes. These were used for the definition of core components during cluster identification. (XLSX)