Supplementary Tables - Chapter 4

Supplementary Tables for the analysis of genome size dynamics in Papilionidae butterflies (Chapter 4).Supplementary Table S4.1: metadata of the 33 genomes analyzed, including species taxonomy, data accession numbers, assembly statistics and references.Supplementary Table S4.2: estimations of dN/dS; heterozygosity; intron lengths; overall TE content in bp, total copy numbers and full length copy numbers; species-specific TE content in bp, total copy number and full-length copy numbers; indel rates and deletion bias; solo-LTR:full-length LTR ratios; 3'-truncated:5'truncated LINE ratios; net quantities and rates of TE_sp gain, overall DNA_del, DNA_microdel and DNA_largeldel; number of HTT.Supplementary Table S4.3: dN/dS (top panel) and heterozygosity (bottom panel) as predictors of each TE order quantity under PGLS (green) and simple linear models (blue). Models were calculated for both the overall TE contents (red) and the lineage-specific rates of TE accumulation calculated on terminal branches (yellow).Supplementary Table S4.4: List of all the detected horizontal exchanges of TEs including the species pair involved, and the type of element, and respective summaries across all TE orders and species.Supplementary Table S4.5: Linear regression of number of HTT per TE order per species as predicted by the respective TE content, including an effect of TE orders on the slope. Independent variables with a significant effect are in bold.