Additional file 1 of A million-cow genome-wide association study of productive life in U.S. Holstein cows

Additional file 1: Table S1. Top 300 SNP additive effects of PL. This table provides test results for the top 300 additive effects. ‘d’ indicates the SNP is downstream of the gene. ‘u’ indicates the SNP is upstream of the gene. ‘Allele-1’ is the nucleotide of allele ‘1’, and ‘Allele-2’ is the nucleotide of allele ‘2’. ‘al+’ is the positive allele, ‘al–’ is the negative allele, ‘ae+’ is the allelic effect of the positive allele (Eq. (9)), ‘ae–’ is the allelic effect of the negative allele (Eq. (9)). ‘f_al+’ is the frequency of the positive allele. ‘f_al-’ is the frequency of the negative allele. ‘Effect’ is the additive effect of the SNP as the difference between allelic effects of allele ‘1’ and allele ‘2’ (Eq. (10)).