遇见数据集

Data and code for: Deciphering mating type genes and sexual potential in the cross-kingdom pathogen Exserohilum rostratum

收藏
Zenodo2026-09-26 更新2026-10-01 收录
官方服务:

资源简介:

Supplementary Data 1 for the Review "Deciphering mating type genes and sexual potential in the cross-kingdom pathogen Exserohilum rostratum" (submitted to npj Fungal Science). All analyses use publicly available genome assemblies (ER1, SCAU-6, BF9006, LWI, ZM170581, SR-KPL1) and sequencing reads (NCBI BioProject PRJNA245241). The archive contains: - MAT1-1-1 and MAT1-2-1 coding and protein sequences for all six genomes, with gene-model summaries and tBLASTn results- InterProScan domain annotations- Selection analyses: Nei-Gojobori results, and codeml alignments, trees and output files- Genome-relatedness (average nucleotide identity) results- Phylogenetic footprinting profiles and motif-scan outputs, including the DHN-melanin promoter analysis- Mating and meiosis gene models (AUGUSTUS) and miniprot alignments across all six genomes- MAT protein alignments and IQ-TREE phylogenies- Species-identity comparisons using ITS, gapdh and tef1- In-silico PCR results for published and newly designed MAT primers- Python scripts used for the analyses and to generate the figures Software versions and parameters are given in the Methods section of the associated article.

提供机构:
Zenodo
创建时间:
2026-09-25
二维码
社区交流群
二维码
科研交流群
商业服务