Supplemental Material for Iversen et al., 2020

S1
Differentially expressed genes between FW and SW at times T4, T5 and T6, for
the different treatments (LL, SP, SPLL). Data filtered for logFC>|1| and
FDR<0.01.

S2 Box
plots showing the expression of genes KCNJ1, KCNJ4, and JCAD (raw counts).

S3
Additional GO plots showing GO-terms analysis of SW-sensitive genes expression
at T4, T5 and T6 for the different photoperiod treatments. Data are shown as
Bubble-plots of GO-terms and the number of genes linked to each term. Terms
enriched across groups are indicated by colour. Strongly represented GO-terms
are labelled. For T4 and T5 terms connected to biological processes, cellular
components and molecular function are shown, for T6 only cellular comonnent and
molecular function are shown as biological process can be viewed in figure 2.

S4 Set of
tables (sheet 1,2,3) showing the enriched GO-terms at T4, for the three
photoperiod treatments, adjusted p-value>0.05. Data has also been filtered
for number of connected genes. Also included is an overview of the data behind
T4 GO plots in S3, listing all GO terms, number of genes in each term, and
overlap between photoperiod treatments.

S5 Set of
tables (sheet 1,2,3) showing the enriched GO-terms at T5, for the three
photoperiod treatments, adjusted p-value>0.05. Data has also been filtered
for number of connected genes. Also included is an overview of the data behind
T5 GO plots in S3, listing all GO terms, number of genes in each term, and
overlap between photoperiod treatments.

S6 Set of
tables (sheet 1,2,3) showing the enriched GO-terms at T6, for the three
photoperiod treatments, adjusted p-value>0.05. Data has also been filtered
for number of connected genes. Also included is an overview of the data behind
T6 GO plots in S3, listing all GO terms, number of genes in each term, and
overlap between photoperiod treatments.

S7
Overview of NFAT-genes, including raw count data. Genes are ordered as in the
heatmap.

S8
Boxplots showing the expression of the NFAT genes (raw counts).