Transposable elements annotation

Transposable elements (TEs) annotation of stinging nettle (<i>Urtica dioica</i> ssp. <i>dioica</i>) genomes using EDTA. The .tar.gz file contains the following files:<b>Figshare_uploads_TE.tar</b><b>.gz:</b>TE annotation of Female haplotype 1 chromosomes in .gff3 (Nettle_female_H1.chr.fa.mod.EDTA.TEanno.gff3)TE annotation of Female haplotype 2 chromosomes in .gff3 (Nettle_female_H2.chr.fa.mod.EDTA.TEanno.gff3)TE annotation of Female haplotype 1 non-chromosomal contigs in .gff3 (Nettle_female_H1_non_chr_scaff.fa.mod.EDTA.TEanno.gff3)TE annotation of Female haplotype 2 non-chromosomal contigs in .gff3 (Nettle_female_H2_non_chr_scaff.fa.mod.EDTA.TEanno.gff3)TE annotation of Female haplotype 1 chromosomes in .bed (Nettle_female_H1.chr.fa.mod.EDTA.TEanno.bed)TE annotation of Female haplotype 2 chromosomes in .bed (Nettle_female_H2.chr.fa.mod.EDTA.TEanno.bed)TE annotation of Female haplotype 1 non-chromosomal contigs in .bed (Nettle_female_H1_non_chr_scaff.fa.mod.EDTA.TEanno.bed)TE annotation of Female haplotype 2 non-chromosomal contigs in .bed (Nettle_female_H2_non_chr_scaff.fa.mod.EDTA.TEanno.bed)<b>Figshare_uploads_TE_male.tar</b><b>.gz:</b>TE annotation of Male haplotype 1 in .gff3 (Nettle_male_H1_Round_3_genome_reoriented_no_contamination_for_EDTA.fa.mod.EDTA.TEanno.gff3)TE annotation of Male haplotype 2 in .gff3 (Nettle_male_H2_Round_3_genome_reoriented_no_contamination_for_EDTA.fa.mod.EDTA.TEanno.gff3)TE annotation of Male haplotype 1 in .bed (Nettle_male_H1_Round_3_genome_reoriented_no_contamination_for_EDTA.fa.mod.EDTA.TEanno.bed)TE annotation of Male haplotype 2 in .bed (Nettle_male_H2_Round_3_genome_reoriented_no_contamination_for_EDTA.fa.mod.EDTA.TEanno.bed)EDTA summary report of Male haplotype 1 (Nettle_male_H1_Round_3_genome_reoriented_no_contamination_for_EDTA.fa.mod.EDTA.TEanno.sum)EDTA summary report of Male haplotype 2 (Nettle_male_H2_Round_3_genome_reoriented_no_contamination_for_EDTA.fa.mod.EDTA.TEanno.sum)Annotated TE sequences in .fasta for Male haplotype 1 (Nettle_male_H1_Round_3_genome_reoriented_no_contamination_for_EDTA.fa.mod.EDTA.TE.fa)Annotated TE sequences in .fasta for Male haplotype 2 (Nettle_male_H2_Round_3_genome_reoriented_no_contamination_for_EDTA.fa.mod.EDTA.TE.fa)