AMIA Pipeline Test Data

The first datasets in the HIV-1C_ZA folder contains the initial Human Immuniodefeciency Virus 1C (HIV-1C) Integrase (IN) amino acid mutations associated with patient sequence data extrapoloated in a previous research project conducted by R. Chitongo (DOI: 10.1371/journal.pone.0223464). This dataset is curated in a standard Comma Separated Variable (.csv) file with each of the mutations associated with a particular patient listed benath a random identifier with no direct or indirect patient information present. These random identifiers do not correlate to a specific patient either and have just been assigned for differential purposes between which mutations were present in a particular patient. This also includes the protein homology model generated in our study present in the standar Protein Data Bank (PDB) format of the HIV-1C IN. The second variant_ouputs folder contains the various datasets and files generated from the initial phase of the AMIA pipeline which is further elaborated upon in the published literature.