List of unigenes containing or not TE–cassette insertions identified in the transcriptome from C. arabica used as target in the macroarray analyses using as probe RNA samples from C. arabica.

*Query id: arbitrary identification by RepeatMasker and tBLASTx; Library: tissue, developmental stage or stress condition in which the clone was obtained (BP1 - Suspension cells treated with acibenzolar-S-methyl, CA1 - Non-embryogenic callus, CB1 - Suspension cells treated with acibenzolar-S-methyl and brassinosteroids, CL2 - Hypocotyls treated with acibenzolar-S-methyl, FB1 - Flower buds in stages 1 and 2–long, FR1 - Flower buds no 6, pinhead fruits no 1 and fruits (stages 1 and 2)–long, FR2 - Flower buds no 6, pinhead fruits no 1 and fruits (stages 1 and 2)–short, LV4 - Young leaves from orthotropic branch – long, LV5 - Young leaves from orthotropic branch–short, PA1 - Primary embryogenic callus, RT5 - Roots with acibenzolar-S-methyl, RT8 - Suspension cells stressed with aluminum, SH2 - Water deficit stresses plants (pool of tissues).