(high-temp) No 3. Filtering: (16S rRNA/ITS) Output
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资源简介：
**Output files from the No 3. Filtering Workflow** page of the SWELTR high-
temp study. ASV filtering for 16S rRNA & ITS using **a**) Arbitrary filtering,
**b**) PERFect (PERmutation Filtering test for microbiome data), and **c**)
PIME (Prevalence Interval for Microbiome Evaluation) Workflow objects:
**filtering_wf.rdata:** contains all variables and phyloseq objects from 16s
rRNA and ITS ASV filtering. To see the **Objects** , in R run
_load("__filtering_wf.rdata", verbose=TRUE)_
Additional files:
For convenience, we also include individual phyloseq objects for each filtered
data set.
**_Arbitrary_ :
**
****ssu18_ps_filt.rds:**** phyloseq object for Arbitrary filtered 16S rRNA
ASVs.****
its18_ps_filt.rds:**** phyloseq object for Arbitrary filtered ITS ASVs.****
****
**_PERfect_ :**
******ssu18_ps_perfect.rds** : ****phyloseq object for PERfect filtered 16S
rRNA ASVs.****
**its18_ps_perfect.rds** : ****phyloseq object for PERfect filtered ITS
ASVs.****
****
****_PIME_ : ** **
**ssu18_ps_pime.rds** : phyloseq object for PIME filtered 16S rRNA ASVs.
**its18_ps_pime.rds** : phyloseq object for PIME filtered ITS ASVs.
**Source code** for the workflow can be found here:
https://github.com/sweltr/high-temp/blob/master/filtering.Rmd
创建时间：
2024-08-15
