Data For Purge Haplotigs Case Study

Data for the Purge Haplotigs case study: <strong>final_arabidopsis/cab_sauv/cpyxidata/zfinch</strong> These are the files generated by Purge Haplotigs. The original BAM files provided by PacBio are not included due to their size. <strong>PE_mapping_arabidopsis/cpyxidata/zfinch</strong> These are the files generated via the mapping and circos workflows. The unmapped reads are not included (empty fastq files) as they are available from the NCBI SRA. <strong>ph_busco/dotplots/quast</strong> Output files for the BUSCO analysis, MUMmer files and dotplots, and quast analysis files for each assembly.