Additional file 4 of PoMeLo: a systematic computational approach to predicting metabolic loss in pathogen genomes

Additional file 4: Pathway statistics. This file is produced by PoMeLo and stored as ‘pathways_stats_organism_date.tab’ where the organism and date are specific to the analysis. This file contains all genome-gene combinations either found in the genomes in the analysis (target/non-target) or present in the complete reference set. For each genome-gene pair, information is provided about the genome statistics, genome name, genus and species, ec_number, patric_id, gene_name, and product description. Additionally, statistics are provided on the gene presence/absence across species, genus, group (target/non-target) and pathway.