Additional file 7 of Transcriptome and proteome profiling reveal complementary scavenger and immune features of rat liver sinusoidal endothelial cells and liver macrophages

Additional file 7. Genes annotated to antigen processing and presentation and lymphocyte co-stimulation. Excel file (.xls) with the list of expressed genes associated with antigen processing and presentation (GO:0019882), and lymphocyte co-stimulation (GO:0031294) in LSECs and KCs. The file shows their corresponding abundance in the RNA-seq datasets (RPKM values; worksheet named “Immuneactivation_RPKM_RNAseq”) and label-free proteomics datasets (iBAQ values; worksheet named “Immuneactivation_iBAQ_LFP”) along with differential expression analysis outputs. For visualization of the selected genes and proteins shown in Fig. 8, log2 (RPKM+ 1), and log2 (iBAQ+ 1) were used.