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North Pond Metatranscriptomics Supplemental Tables

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DataCite Commons2020-08-25 更新2024-07-28 收录
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Supplementary Table 1. DNA and RNA extraction yields for all samples (in ng/µl).<br>Supplementary Table 2. Sequence, quality filtering, and assembly data and accession numbers for metagenomes and metatranscriptomes.<br>Supplementary Table 3. Completeness, contamination, strain heterogeneity, and taxonomic identification of the 64 high-completion MAGs obtained by binning. <br>Supplementary Table 4. Counts per million reads (CPM) of all annotated genes in each metatranscriptome.<br>Supplementary Table 5. Completeness of all KEGG modules in all high-completion MAGs determined using Hidden Markov Models with KEGG Decoder. Completeness of each enzymatic pathway pathway is expressed as a percentage (0 to 100%).<br>Supplementary Table 6. Extracellular proteases annotated in all 64 high-completion bins using a Prokka search against the MEROPS database followed by analysis using PSortb and SignalP.<br>Supplementary Table 7. Carbohydrate-active enzymes annotated in all 64 high-completion bins using a Prokka search against the CAZy database. <br>Supplementary Table 8. Genes related to iron acquisition, storage, and reduction/oxidation in each MAG, annotated using FeGenie.<br>
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2020-08-03
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