Sexual signals persist over deep time: ancient co-option of bioluminescence for courtship displays in cypridinid ostracods

List of analysis directories included *.zip files with reference to which figures these analyses were used to generate in the manuscript and in the supplement (Supplement - Revision1 - Aug_25.pdf). Transcriptome analyses: Transcriptome assemblies (CDS and AA) - transcriptome_assemblies.zip ASTRAL-Pro with all orthofinder orthologs (Fig 1, S1, S2) - Astral_transcriptome_analysis.zip IQ-TREE concatenated orthofinder/phylopypruner (Fig S3) and concordance analysis (Fig S4) - iqtree_transcriptome_analysis.zip Time Tree analyses: Sortadate and Bayesian relaxed molecular clock analysis (Fig S5, S6, S7, S8) - SortaDate_SensitivityAnalysis.zip Time tree stochastic character mapping (Fig 2b,c) - timetree_stochastic.zip Combined transcriptome and mitochondrial phylogeny: Combined mt and transcriptome (Figs 3, S9, S10) and mt only (S11) - mitochondrial_analyses.zip Ancestral State reconstructions (Figs S12, S13) - ancestral_state_reconstruction.zip