S1 Table -

A. List of DGCA gene sets in the simulated data that are also differentially coexpressed as per CoXpress. DGCA network of top 500 differential coexpressed gene pairs. B. List of differentially coexpressed gene sets (determined through CoXpress analysis) in the simulated data. C. CoVar analysis on simulated expression data. Aggregated CoVar network across 25 runs. D. Annotated Yeast Analysis. Variational, nearest-neighbor, and core genes identified by CoVar, along with their differential expression information. E. Dissimilarity between differentially expressed genes (DEGs) and CoVar genes in yeast dataset. List of highly ranked CoVar genes that are not highly differentially expressed, and vice versa. F. Coexpression analysis. List of differentially coexpressed gene sets (determined through CoXpress analysis) in yeast dataset that also belong to the same CoVar module. G. Similarity between differential gene coexpression analysis (DGCA) and CoVar analysis. List of DGCA gene sets that also belong to the same CoVar module. H. Similarity between differential gene coexpression analysis (DGCA) and CoXpress analysis. List of DGCA gene sets that are also differentially coexpressed as per CoXpress. I. Variationality in terms of mean squared error and differential coexpression the top 50 most differentially expressed genes that were absent from nearest neighbor networks in all 25 CoVar runs.
(XLSX)