Supporting data for "JUMP Cell Painting chemical dataset: Morphological map of 116k compounds in human cells"

Input files for the jpx analysis pipeline supporting "JUMP Cell Painting chemical dataset: Morphological map of 116k compounds in human cells." Pinned here for reproducibility. API-derived (regenerable via nb43_ss_download_data.py) pkis_chembl_cache.json - PKIS molecule data from ChEMBL API (CHEMBL2303647). CC BY-SA 3.0. mitotox_compounds.parquet - Mitochondrial toxicity annotations from mitotox.org + PubChem SMILES. 1383 compounds. Manual exports (not regenerable) pd_export_01_2025_875_targets_standardized.xlsx - Chemical probe targets from Probes & Drugs portal (Jan 2025). molport_batch_search.zip - MolPort batch availability search for JUMP compounds. v3: Updated title.