Samples for CNIC-Proteomics Nextflow pipelines: nf-PTM-compass

We present several input sample files for the execution of various Nextflow pipelines developed by the Cardiovascular Proteomics Lab/Proteomics Unit at the National Centre for Cardiovascular Research (CNIC, https://www.cnic.es). The nf-PTM-compass enhances the identification and quantification of Post-Translational Modifications (PTMs) (https://github.com/CNIC-Proteomics/nf-PTM-compass). The available sample files are as follows: nf-PTM-compass_Heteroplasmic_Heart.zip: Heart tissue. Input files for nf-PTM-compass, derived from the study by Bagwan N, Bonzon-Kulichenko E, Calvo E, et al. (*), with results from an open search conducted using nf-SearchEngine results. nf-PTM-compass_Heteroplasmic_Liver.zip: Liver tissue. Input files for nf-PTM-compass, derived from the same study (*), with results from an open search conducted using nf-SearchEngine results. nf-PTM-compass_Heteroplasmic_Muscle.zip: Mucle tissue. Input files for nf-PTM-compass, derived from the same study (*), with results from an open search conducted using nf-SearchEngine results. (*) Bagwan N, Bonzon-Kulichenko E, Calvo E, et al. Comprehensive Quantification of the Modified Proteome Reveals Oxidative Heart Damage in Mitochondrial Heteroplasmy. Cell Reports. 2018;23(12):3685-3697.e4. doi:10.1016/j.celrep.2018.05.080