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C24-SMT alignment

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NIAID Data Ecosystem2026-03-14 收录
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https://figshare.com/articles/dataset/C24-SMT_alignment/22153412
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We reconstructed the evolutionary relationships of animal C24-SMTs from sponges, cnidarians, rotifers, mollusks and annelids, and compared these to previously described C24-SMTs from bacteria, microbial eukaryotes, fungi and plants. Together with the animal C24-SMTs these sequences were trimmed (>200 aa and <400aa), clustered (90% ID), aligned using mafft with ginsi (Katoh et al. 2005) and trimmed with BMGE (Criscuolo et al 2010).  IQ-TREE (v1.6.12) (Minh et al. 2020) was used to predict the best-fit models of evolution and to calculate a maximum-likelihood tree with ultrafast bootstrap support values from the concatenated alignment.
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2023-03-01
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