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Zenodo Data Dataset 1. TaDa-Poll gene clusters

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Zenodo2026-05-24 更新2026-05-29 收录
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(Clusters tab). The Cluster column corresponds to the identity of the cluster to which the gene belongs. MeanT1, MeanT2 and MeanT3 correspond to the mean log2 ratio change for binding across the annotated gene (DamPol II/Dam) and biological replicates at T1, T2 and T3 timepoints respectively. (FDR values tab). The nomenclature Tx_y is used to represent the different biological replicates, with: x = timepoint and y = replicate. The value of the FDR (False Discovery Rate) is written for each gene for each biological replicate. Its value will determine whether the gene is considered as expressed (“1”, FDR < 0.01) or not (“0”, FDR ≥ 0.01) at each timepoint. (DAVID analysis T1/T2/T3 specific tabs). The Functional annotation clustering from DAVID for genes only found at T1, T2 or T3 yielded clusters of annotations, numbered in the Cluster column. As DAVID uses a range of annotations, the exact category and related specific term are listed within each cluster. The Cluster enrichment score corresponds to the geometric mean (in -log scale) of genes's p-values for one annotation cluster. The Count column represents the number of genes form the dataset involved in this annotation category, and the Percentage column the corresponding percentage. The p-values of each annotation term are modified Fisher Exact p-values (EASE score) and ranges from 0 to 1. p-values equal to or smaller than 0.05 are considered strongly enriched in the annotation categories. The Fold enrichment column refers to the enrichment of the annotation term compared to the background population of genes.

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Zenodo
创建时间:
2026-05-24
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