Data from: A unique ecological niche fosters hybridization of oak-tree and vineyard isolates of Saccharomyces cerevisiae.

DC6.vcfSNPs identified in cherry strain DC 6 using GATK. SNPs were called on both DC 6 and DC 16, then sites for each strain were separated, and all non-SNP positions removed using VCFtools.DCM6.PASS_SNPs.NonREF.recode.vcfDC16.vcfSNPs identified in cherry strain DC 16 using GATK. SNPs were called on both DC 6 and DC 16, then sites for each strain were separated, and all non-SNP positions removed using VCFtools.DCM16.PASS_SNPs.NonREF.recode.vcfRNAseqCountsRead counts for each gene across all strains analyzed in EdgeR.Counts.txtOakvVintopTagsEdgeR output for differentially expressed genes in oak versus vineyard strains.DCtopTagsEdgeR output for DC-specific differentially expressed genes.DCvOaktopTagsEdgeR output for differentially expressed genes in DC versus oak strains.DCvVintopTagsEdgeR output for differentially expressed genes in DC versus vineyard strains.PCAsnpsVCF file containing all of the genotype data used for PCA.25Strains_latest_snp_R64-1-1_NonREF.recode.vcfPCAmap Filemap file created for PCA.25Strains.mapPCA ped fileped file used for PCA25Strains.pedPCArawraw file for PCA analysis25Strains.rawCh4 alignmentAlignment file of Chromosome 4 sanger sequencingCh4.nexChr4 tree fileMr. Bayes tree file for Chromosome 4Ch4.nex.con.treCh9 alignmentAlignment file of Chromosome 9 sanger sequencingCh9.nexCh10 alignmentAlignment file of Chromosome 10 sanger sequencingCh10.nexCh9 tree fileMrBayes tree file for Chromosome 9Ch9.nex.con.treCh10 tree fileMrBayes tree file for Chromosome 10Ch10.nex.con.tre