Sample Graph Datasets in CSV Format

Sample Graph Datasets in CSV Format

Note: none of the data sets published here contain actual data, they are for testing purposes only. 

Description

This data repository contains graph datasets, where each graph is represented by two CSV files: one for node information and another for edge details. To link the files to the same graph, their names include a common identifier based on the number of nodes. For example:

dataset_30_nodes_interactions.csv:contains 30 rows (nodes).

dataset_30_edges_interactions.csv: contains 47 rows (edges).

the common identifier dataset_30 refers to the same graph.

CSV nodes

Each dataset contains the following columns:

Name of the Column
Type
Description

UniProt ID
string
protein identification

label
string
protein label (type of node)

properties
string
a dictionary containing properties related to the protein.

CSV edges

Each dataset contains the following columns:

Name of the Column
Type
Description

Relationship ID
string
relationship identification

Source ID
string
identification of the source protein in the relationship

Target ID
string
identification of the target protein in the relationship

label
string
relationship label (type of relationship)

properties
string
a dictionary containing properties related to the relationship.

Metadata

Graph
Number of Nodes
Number of Edges
Sparse graph

dataset_30*

30

47

Y

dataset_60*

60

181

Y

dataset_120*

120

689

Y

dataset_240*

240

2819

Y

dataset_300*

300

4658

Y

dataset_600*

600

18004

Y

dataset_1200*

1200

71785

Y

dataset_2400*

2400

288600

Y

dataset_3000*

3000

449727

Y

dataset_6000*

6000

1799413

Y

dataset_12000*

12000

7199863

Y

dataset_24000*

24000

28792361

Y

This repository include two (2) additional tiny graph datasets to experiment before dealing with larger datasets.

CSV nodes (tiny graphs)

Each dataset contains the following columns:

Name of the Column
Type
Description

ID
string
node identification

label
string
node label (type of node)

properties
string
a dictionary containing properties related to the node.

CSV edges (tiny graphs)

Each dataset contains the following columns:

Name of the Column
Type
Description

ID
string
relationship identification

source
string
identification of the source node in the relationship

target
string
identification of the target node in the relationship

label
string
relationship label (type of relationship)

properties
string
a dictionary containing properties related to the relationship.

Metadata (tiny graphs)

Graph
Number of Nodes
Number of Edges
Sparse graph

dataset_dummy*
3
6
N

dataset_dummy2*
3
6
N