dm6-chrHis

Custom dm6 genome where the histone gene repeats have been deleted and collapsed into a single repeat on a new chromosome (chrHis) for simplified mapping and downstream quantification This directory includes files for the "dm6-chrHis" reference genome. This reference genome includes chromosomes chr2L, chr2R, chr3L, chr3R, chr4, chrX, chrY, chrHis HisC region is chr2L:21,400,839-21,573,418 and is deleted from this genome (dHisC) The 1x Histone array (5kb repeat) is included as a new chromosome (chrHis) "transcript" and "gene" features have been added to chrHis in dm6-chrHis.gtf for downstream analysis dm6-chrHis.chrom.sizes -> length of chromosomesdm6-chrHis.fa -> FASTA of reference genomedm6-chrHis.gtf -> annotation of dm6_dHisC_chrHis reference genomedm6-chrHis.bed -> 6 column BED file with gene names (from .gtf)chrHis_genes.gtf -> annotation of just chrHis