Additional file 1 of Whole genome based insights into the phylogeny and evolution of the Juglandaceae

Additional file 1: Table S1. The taxa, Genbank accession number, and family of 41 species used for phylogenetic analysis. Table S2. Characterization of three primers to verified three pseudogenes. Table S3. Summary of variants from all Juglandaceae genome resequencing based on comparison with Juglans regia whole genome sequences. Table S4. Protein-coding genes (n = 61) included in the phylogenetic analysis. Table S5. Characterization of sixteen mitochondrion protein-coding genes (mtCDS) primers used in this study. Table S6. The PartitionFinder method for the best model combinations of the ML phylogenetic tree based on 61 protein-coding genes. Table S7. Sources of Internal transcribed spacer (ITS) sequences used in this study. Table S8. Fossil evidence used for estimation divergence time of Juglandaceae.