triDNAlib: 3D fragment library of DNA trinucleotides
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下载链接：
https://zenodo.org/record/6517063
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资源简介：
A library of 3D structures of DNA trinucleotides, extracted from the PDB using the protNAff tool [1], in all-atom and coarse-grain [2] representations.
The coordinates of the fragments are stored as numpy matrices. To convert them into PDB files, unzip the archive, enter it and run the command line:
bash scripts/convert_npy_pdb.sh
The PDB files will be created in ssDNA, both as multi-models and single-model files, for both all-atom ("aa") and coarse-grain ("r" for "reduced).
If you face any error or have any question, please contact the authors.
[1] https://github.com/isaureCdB/ProtNAff
[2] Setny, Bahadur and Zacharias, BMC Bioinformatics. 2012. doi: 10.1186/1471-2105-13-228
创建时间：
2022-05-05
