jrsi_support_v4: Data package for "Genome as Executable Constraints: A Metriplectic Framework for Topological Ground States and Non-equilibrium Cycles"

This record contains the jrsi_support_v4 dataset associated with the manuscript“Genome as Executable Constraints: A Metriplectic Framework for TopologicalGround States and Non-equilibrium Cycles” (Y. J. Lee). The archive jrsi_support_v4_updated.zip provides all figure-source data andsupporting tables needed to reproduce the numerical results, figures andtables in the paper and Supplementary Material. The main contents are: - data/: CSV and YAML files with residual-stress values Pres, constraint flags and diagnostics for all candidate topologies and cycles in the four case studies (insulin disulfide locking, TBP–DNA bending, collagen triple-helix assembly, and ATP synthase rotary operation), plus global parameter tables and invariants.- robustness/: additional CSV/YAML files used for in-silico ablations and parameter-sensitivity analyses (penalty-weight rescaling, stiffness perturbations, extended scans, boundedness tests, etc.).- mapping/: a small table mapping each file to the corresponding figure or table in the manuscript.- code/: minimal helper scripts used to generate summary tables from the data.- provenance/ and metadata/: checksums and metadata for internal consistency. The dataset is intended to make all numerical results in the manuscriptreproducible and to provide a starting point for further exploration of thePhysically Constrained Topological Solver (PCTS) and the metriplectic,constraint-based framework described in the paper. Please cite this dataset as: Lee, Y. J. (2025). jrsi_support_v4: Data package for “Genome as ExecutableConstraints: A Metriplectic Framework for Topological Ground States andNon-equilibrium Cycles”. Zenodo. https://doi.org/10.5281/zenodo.17636118