A cross-species single-cell kidney atlas: Data repository

Data repository linked to our manuscript "Analysis of individual patient pathway coordination in a cross-species single-cell kidney atlas" (Klötzer et al., Nature Genetics 2025) including our 5 annotated snRNA-seq atlases in anndata format: 1.) SISKA.h5ad: Our cross-species atlas using one-to-one orthologous genes between human, mouse, and rat 2.) Human.h5ad: Human-only atlas (SISKA annotation) 3.) Mouse.h5ad: Mouse-only atlas (SISKA annotation) 4.) Rat.h5ad: Rat-only atlas (SISKA annotation) 5.) Human_extended.h5ad: Human extended disease-centered atlas 6.) raw_feature_bc_matrix.h5 files of unpublished human biopsy samples Please also see the separate metadata.csv files for sample information. For details, check our manuscript or SISKA GitHub repository: https://github.com/susztaklab/SISKA/ Please cite our manuscript! "Analysis of individual patient pathway coordination in a cross-species single-cell kidney atlas" (Klötzer et al., Nature Genetics 2025, DOI: 10.1038/s41588-025-02285-0)" https://www.nature.com/articles/s41588-025-02285-0