Global patterns and rates of habitat transitions across the eukaryotic tree of life

This repository contains supplementary data associated with the manuscript.<br>There are 8 files in this collection:<br><b>pr2.transitions.fasta.gz</b>The in house database based on the PR2 database used for taxonomic annotation of long-read environmental sequences. Fasta file.<br><b>soil.clustered.filtered.fasta.gz</b>Short-read environmental sequences from soils corresponding the V4 fragment of the 18S gene. Sequences have been clustered at 97% similarity, and low abundance sequences filtered out to be conservative (see manuscript for details). <br><b>freshwater.clustered.filtered.fasta.gz</b>Short-read environmental sequences from freshwater corresponding the V4 fragment of the 18S gene. Sequences have been clustered at 97% similarity, and low abundance sequences filtered out to be conservative (see manuscript for details).<br><b>marine_euphotic.clustered.filtered.fasta.gz</b>Short-read environmental sequences from marine euphotic layer (surface + DCM) corresponding the V4 fragment of the 18S gene. Sequences have been clustered at 97% similarity, and low abundance sequences filtered out to be conservative (see manuscript for details).<b><br>marine_aphotic.clustered.filtered.fasta.gz</b>Short-read environmental sequences from marine aphotic waters (mesopelagic + bathypelagic) corresponding the V4 fragment of the 18S gene. Sequences have been clustered at 97% similarity, and low abundance sequences filtered out to be conservative (see manuscript for details).<br><b>long_read.18S.otus.fasta.gz</b>Long read environmental sequence OTUs generated in this study and taxonomically annotated against the PR2_transitions database. Header indicates sequence ID, number of reads, sample, environment, and taxonomy. 18S sequences only.<br><b>long_read.28S.otus.fasta.gz</b>Long read environmental sequence OTUs generated in this study and taxonomically annotated against the PR2_transitions database. Header indicates sequence ID, number of reads, sample, environment, and taxonomy. 28S sequences only.<br><br>