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Additional file 2: of Genome-wide identification and interactome analysis of members of two-component system in Banana

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Figshare2019-08-28 更新2026-04-08 收录
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https://springernature.figshare.com/articles/Additional_file_2_of_Genome-wide_identification_and_interactome_analysis_of_members_of_two-component_system_in_Banana/9740411/1
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Figure S1. Domain architecture of TCS proteins in Musa acuminata and Musa balbisiana obtained using SMART domain detection tool. Figure S2. (A) Circular representation of gene duplication event of TCS gene family in Musa acuminata and Musa balbisiana, generated using reciprocal blast hits for tandem and segmental duplicates in MCScanX program. (B) Circular representation of gene duplication event with in TCS gene groups in Musa acuminata and Musa balbisiana, generated using reciprocal blast hits for tandem and segmental duplicates in MCScanX program. Figure S3. Bar representation of chromosomal position of TCS genes in Musa acuminata (A) and Musa balbisiana (B). Figure S5. Expression of RR-A, RR-B and PRR genes in ethylene treatment: (A), (C) and € represents Log2 transformed fold change values from Banana Genome Hub DB, for 40 days, 60 days, 90 days (normal and ethylene treatment). (B), (D) and (F) represent Log2fold change value for TCS genes from 4 day ripe pulp (after ethylene treatment). Figurfe S6. TCS gene expression analysis in fungal infection in corm and roots of banana plant, expression of Receptor CHK/HK and mediator HPT genes in fungal infection: joint panel of 3 groups represent the fungal infection in root at 3 h, 27 h, and 51 h by Foc1 & Foc4 strains. Corm represents Log2 transformed fold change values for receptors during infection in corm. Figure S7. Expression of RR-A, RR-B and PRR genes in fungal infection: Joint panel of 3 groups represent the fungal infection in root at 3 h, 27 h, and 51 h by Foc1 & Foc4 strains. Corm represents Log2 transformed fold change values for receptors during infection in corm. Figure S8. Co expression network of TCS genes in ethylene treatment (A) and in fungal infection (B), based on correlation value (r) of TCS genes as bait, with top 200 differentially expressing genes. Cytoscape program was used for calculation and visualization of the network. Figure S9. Pictorial representation of docked proteins in TCS complexes, obtained by molecular docking. (A) Represents, representative members of receptor proteins with MaHP1 and MaRR1. (B) Represents, representative members of receptor proteins with MaHP1 and MaRR21. (C) Represents representative members of receptor proteins with MaHP1 and MaPRR1. Figure S10. Gene structure for HK, HPT and RR genes of Musa acuminata and Musa balbisiana, generated using GSDS online tool from using the genomic coordinates of banana GFF. (RAR 4103 kb)
提供机构:
Yogeshwar Dhar; Prabodh Trivedi
创建时间:
2019-08-28
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