Surface ocean metatranscriptome high-resolution time series from InVirT-19-BATS

This resource contains data originating from the JGI project, "Inferring virus-host interactions through multi-omics high-resolution time series" (see award and files). The sequencing project was part of the NSF project, "InVirT-19-BATS": "Inferring Cellular Lysis and Regeneration of Organic Matter by Marine Viruses," which involved sample collection in the vicinity of the Bermuda Atlantic Time Series (BATS) in October 2019 (see the BCO-DMO project page). img_data_integration.md explains files in this record and shows how they were generated, including code which can be run as a reproducible workflow. img_data.tsv.gz contains gene-level data from assembled metatranscriptomic transcripts. The table merges data products generated by the JGI IMG Annotation Pipeline (v5.0.23). The table includes 35 surface ocean metatranscriptomic samples with sample metadata and CTD data. INVIRT19_metaT_metadata.txt contains metatranscriptomic sample metadata provided by Daniel Muratore that also applies to the samples in the Muratore et al. 2024 paper, "Diel partitioning in microbial phosphorus acquisition in the Sargasso Sea." all_casts.csv, also provided by Daniel Muratore, contains cast CTD data collected concomitantly with the metatranscriptomic bottle samples. cognames2003-2014.tab, tigr_names.txt, and ko_list.txt contain function names used in img_data.tsv. Version 2 update: img_data_sample.xlsx is a file that adheres to Simons CMAP submission portal guidelines. dataset_meta_data.xlsx and vars_meta_data.xlsx from v1 are now tabs of this workbook.