Diversification and conservation of DNA binding specificities of SPL family of transcription factors

This dataset contains the AlphaFold3 input JSON files and outputs for the manuscript "Diversification and conservation of DNA binding specificities of SPL family of transcription factors" (Li et al., BioRxiv 2024. https://doi.org/10.1101/2024.09.13.612952). If you use the data or the code, please cite: Li M, Yao T, Galli M, Lin W, Zhou Y, Chen JG, Gallavotti A, Huang SC. Diversification and conservation of DNA binding specificities of SPL family of transcription factors. bioRxiv [Preprint]. 2024 Sep 16:2024.09.13.612952. doi: 10.1101/2024.09.13.612952. PMID: 39345475; PMCID: PMC11429892. The following files are provided: a2025-07-18_analyze_af3_lis-all_results_from_Alphafold_info.tsv: Tab-delimited text file describing the protein and DNA inputs for the AlphaFold3 results in a2025-07-18_analyze_af3_lis-all_results_from_Alphafold.zip a2025-07-18_analyze_af3_lis-all_results_from_Alphafold.zip: ZIP file of AlphaFold3 outputs; see "AlphaFold Server Output Terms of Use" at https://alphafoldserver.com/output-terms a2025-07-18_analyze_af3_lis-af3_inputs.zip: input JSON files for AlphaFold3