Structures of phage-related introns predicted using LinearTurboFold
收藏NIAID Data Ecosystem2026-05-02 收录
下载链接：
https://figshare.com/articles/dataset/Structures_of_phage-related_introns_predicted_using_LinearTurboFold/28228148
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资源简介：
Files used to create SVG illustrations shown in Supplementary figure S2 of the paper:
1. LinearTurboFold alignments/structures
2. GFF annotation files used to color structure (results of annotate_introns.py)
Annotation tsv files were created using:
./reannotate_introns.py -f GIISSD_and_Bastille.unique_099.fasta -o Annotated_GIISSD_and_Bastille_introns
(scripts used in the study are available from https://github.com/zwmuam/Bastilevirinae_introns)
The tsv files were used to color each structure in R2DT Docker container:
r2dt.py templatefree ${intron_structure}.fasta ${intron_structure}
python3 enrich_json.py --input-json ${intron_structure}.json --input-data ${intron_structure}.annot --output ${intron_structure}.enriched.json
json2svg.py -p colour_dict.json -i ${intron_structure}.enriched.json -o ${intron_structure}.enriched.svg
创建时间：
2025-01-17
