Dynamics of bacterial recombination in the human gut microbiome - SNV data
收藏NIAID Data Ecosystem2026-05-02 收录
下载链接：
https://zenodo.org/record/14853784
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资源简介：
Compact SNV catalogs of all the QP genomes used in the analysis of Liu & Good (PLOS Bio 2024; doi: 10.1371/journal.pbio.3002472)
Originally generated in the analysis of Garud & Good et al (PLOS Bio 2019; doi: 10.1371/journal.pbio.3000102).
Files includes:
snvs_feather.tar.gz & snvs_parquet.tar.gz: Dataframes saved in either feather or parquet formats to optimize for space and speed.
midas_db_data.tar.gz: reference genome sequences and genome features in the MIDAS database (doi:10.1101/gr.201863.115). Needed for annotating the SNV types (e.g. nonsense, missense, 4D site, etc.)
Python helper functions for handling these catalogs can be found at https://github.com/zhiru-liu/LiuGood-2024-SNVs
创建时间：
2025-02-12
