GM_processed_files_build39.zip

Processed GigaMUGA SNP genotype data on the Collaborative Cross founders, useful for preparing Diversity Outbred mouse genotypes for use with R/qtl2 (http://kbroman.org/qtl2) Equivalent to https://doi.org/10.6084/m9.figshare.5404759.v2 but with physical and genetic map files revised for mouse build GRCm39 GM_allelecodes.csv: allele codes used for all SNPs GM_foundergeno*.csv: consensus genotypes for each of the 8 founder lines GM_gmap*.csv: Genetic map positions of the SNPs GM_info.csv: marker, chr, Mbp position, cM position, and tier GM_pmap*.csv: Physical map positions (in Mbp) of the SNPs