Data from: Endocrine and epigenetic flexibility in an African starling

This dataset for the manuscript "Endocrine and epigenetic flexibility
in an African starling" includes methylation input files derived from
Superb starling Reduced Representation Bisulfite Sequencing (RRBS)
libraries, and sample collection variables. It includes code for Bismark
alignment of bisulfite data, for Metilene differentially methylated region
(DMR) analysis (with actual data and randomized sample header
runs), CGmapTools variant calling, GEMMA relatedness matrix
generation, an R lme4qtl generalized linear mixed model for CpG
methylation sites, and bedtools intersection of significant DMRs and CpG
sites with genome regions of interest.