Additional file 2. Table S2: Comparison of bacterial pathogen detection performed by Kraken2 implemented in PhytoPipe using raw reads against SILVA rRNA database and rRNA removed reads against NCBI nt

NIAID Data Ecosystem30

RNA-seq alignment files (BAM) for mouse samples SRR3414630

RNA-seq数据分析

转录组研究

This dataset contains uniquely mapped, sorted RNA-seq BAM files and their index files (.bai) for six mouse samples (SRR3414629 to SRR3414637). Mapped to the mm10 genome using HISAT2.

Figshare2025-04-17 更新50

Additional file 1 of SEQing: web-based visualization of iCLIP and RNA-seq data in an interactive python framework

RNA-seq数据分析

iCLIP数据可视化

Additional file 1 Source code and sample data for SEQing. The Python code and samples of Arabidopsis thaliana iCLIP (GSE99427) and RNA-seq (GSE99615) data used to start the sample dataset dashboard.

NIAID Data Ecosystem30

The numbers of reads that cover different numbers of known splices in Ensembl.

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