aeb1 phylogenies
收藏DataONE2013-06-13 更新2024-06-27 收录
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The Aeb1 phylogenies include representatives of all major phyla/supergroups for the three domains of life (when available). Archaea, Eukarya, and Bacteria protein sequences were aligned at once (no profile alignment) and protein alignments were trimmed individually and then concatenated into a supermatrix (resulting in 13432 positions). Aeb1 contains no “Archezoan” sequences (polyphyletic group of long branched eukaryotes such as Giardia, Trichomonas, Microsporidia, and Entamoeba) but has some fast evolving eukaryotes, including Euglenozoa. Methods of inference included maximum likelihood as implemented in RAxML, PhyML-4X (Le et al., 2012), and PhyML-Structure (Le and Gascuel, 2010) or Bayesian inference as implemented in PhyloBayes v. 3.3 or 3.3e (Lartillot et al., 2009).
创建时间：
2013-06-13
