Additional file 2: Table S2. of Genome-wide analysis of DNA methylation and gene expression defines molecular characteristics of Crohnâ s disease-associated fibrosis

RNA-seq analysis of differentially expressed genes in control and fibrotic HIF. Total mRNAs from three different normal (2, 3, 4) and fibrotic fibroblasts (6, 7, 8) were subjected to RNA-seq analysis. Normalized FPKM values were averaged and the log base twofold change for fibrotic versus normal HIF calculated. FDR adjusted p values are shown. Genes were considered significant if the adjusted p value was <0.05 and the log fold change was at least 1.5-fold. The differentially expressed genes are highlighted. (XLS 45Â kb)