Supplementary data for: Evolution of skeletal mineralogy in cheilostome bryozoans from calcite to aragonite seas

Contains all files and code necessary to replicate study. Files are as follows: "AGE-ONLY.xlsx": Contains names of taxa found in all localities in the AGE-ONLY half of the fossil occurrence dataset from Lidgard et al. 2021. "aragonite_bias.R": Contains all R code needed to replicate the tests for aragonite bias in the dataset. "BryoMinBase.csv": The database of measurements of skeletal aragonite content in bryozoans from Piwoni-Piorewicz et al. 2024. "bryominbase.RData": RData file containing BryoMinBase. "CMR data.zip": Zip file containing all files necessary to replicate capture-mark-recapture analysis. Used by "incompleteness.R". "coords.csv": Locality information for every bryozoan-yielding locality in Lidgard et al. 2021. "cyclostome_genera.xlsx": Contains of names of cyclostome bryozoans in the Lidgard dataset; to be removed for analysis of cheilostomes only. "cyclostome_synonyms.xlsx": Related to #4, contains synonyms of cyclostome bryozoans. "FOSLOCAL.xlsx": Contains names of taxa found in all localities in the FOSLOCAL half of the fossil occurrence dataset from Lidgard et al. 2021. "genera.csv": Lists all genera in the Lidgard dataset along with some geological information. "genera.RData": Same as #10, but in RData form. "incompleteness.R": Contains all R code necessary to replicate analyses of the completeness of the paleontological dataset. "mineralogy_fossil.R": Contains all R code needed to replicate the fossil occurrence portion of our methods. "mineralogy_phylo.R": Contains all R code needed to replicate the phylogenetic comparative portion of our methods. "mineralogy_phylo_randomizing_tips.R": Related to #9, contains code to explore the consequences of randomly matching tips in the phylogeny with taxa in BryoMinBase. "occurrences.RData": RData file containing all paleontological occurrences. "paleocoords.RData": RData file containing paleocoordinates for localities. "timetree.tre": Time-scaled phylogeny used in phylogenetic comparative analyses. "timetree.zip": Contains all files necessary to replicate phylogenetic timescaling analysis in treePL. "XRDfossil.xlsx": A new compilation of direct measurements of aragonite content in fossil cheilostome skeletons.