Additional file 10 of Integrated analyses of metabolomics and transcriptomics reveal the potential regulatory roles of long non-coding RNAs in gingerol biosynthesis

Additional file 10: Table S1. The primer lists. Table S2. All metabolic profiles in the rhizomes of three main ginger cultivars. Table S3. The differentially accumulated metabolites in lshj vs. yj1h. Table S4. The differentially accumulated metabolites in tlbj vs. lshj. Table S5. The differentially accumulated metabolites in tlbj vs. yj1h. Table S6. Statistical analysis of the RNA-seq reads for the rhizomes of three ginger varieties with three biological replicates. Table S7. Alignment analysis of clean reads from the nine RNA-seq libraries with the ginger genome. Table S8. lncRNAs information in RNA-seq data. Table S9. The differentially expressed lncRNAs in the lshj vs. yj1h. Table S10. The differentially expressed lncRNAs in the tlbj vs. lshj. Table S11. The differentially expressed lncRNAs in the tlbj vs. yj1h. Table S12. The differentially expressed mRNAs in the lshj vs. yj1h. Table S13. The differentially expressed mRNAs in the tlbj vs. lshj. Table S14. The differentially expressed mRNAs in the tlbj vs. yj1h. Table S15. The analysis of cis-acting DEPCG targets of DELs in the lshj vs. yj1h. Table S16. The analysis of cis-acting DEPCG targets of DELs in the tlbj vs. lshj. Table S17. The analysis of cis-acting DEPCG targets of DELs in the tlbj vs. yj1h. Table S18. The analysis of trans-acting DEPCG targets of DELs in the three comparisons. Table S19. The coefficient analysis between metabolome and RNA-seq. Table S20. The coefficient analysis of 11 gingerol biosynthetic enzyme genes with 3 differentially accumulated gingerol analogs. Table S21. These cis-regulatory DELs to the 5 GBEGs associated with gingerol biosynthesis. Table S22. These trans-regulatory DELs to the 11 GBEGs associated with gingerol biosynthesis. Table S23. The coefficient analysis of 190 TFs genes with 3 differentially accumulated gingerol analogs. Table S24. These cis-regulatory DELs to the 83 TFs genes associated with gingerol biosynthesis. Table S25. These trans-regulatory DELs to the 170 TF genes associated with gingerol biosynthesis.