Condition-specific gene coexpression in ATTED-II (LS index)

The coexpression index has changed in recent versions of ATTED-II.

ATTED-II ver 11: z-score of LS index (larger value indicates stronger coexpression)

ATTED-II ver 10: LS index (larger value indicates stronger coexpression)

ATTED-II ver 4 to ver 9: MR index (smaller value indicates stronger coexpression)

To continue providing the condition-specific gene coexpression data, they were converted to z-score of the LS index. 

ATTED-II ver 6.0 (September 2010): MR index. AGI (Arabidopsis Genome Initiative) code.

ATTED-II ver 11.0 (February 2021): z-score of the LS index. EGI (Entrez Gene ID)code.

Reference of condition-specific gene coexpression data in ATTED-II
Obayashi et al. (2011) ATTED-II updates: condition-specific gene coexpression to extend coexpression analyses and applications to a broad range of flowering plants. Plant Cell Physiol. 52. 213-9.
https://pubmed.ncbi.nlm.nih.gov/21217125/

Detail of the condition-specific gene coexpression data
The condition-specific gene coexpression data are based on the following AtGenExpress expression data.
https://www.arabidopsis.org/portals/expression/microarray/ATGenExpress.jsp

bio: AtGenExpress biotic treatment

ME00341 (Carine Denoux , Fred Ausubel , Julia Dewdney , Simone Ferrari)

ME00353 (Xinnian Dong)

ME00331 (Birgit Kemmerling , Thorsten Nürnberger)

ME00332 (Frederic Brunner , Thorsten Nürnberger)

ME00342 (Dierk Scheel , Frederic Brunner , Lore Westphal)

ME00354 (Fred Ausubel , Julia Dewdney)

hor: AtGenExpress hormone treatment

ME00333 (Hideki Goda , Shigeo Yoshida , Yukihisa Shimada)

ME00334 (Hideki Goda , Shigeo Yoshida , Yukihisa Shimada)

ME00335 (Hideki Goda , Shigeo Yoshida , Yukihisa Shimada)

ME00336 (Hideki Goda , Shigeo Yoshida , Yukihisa Shimada)

ME00337 (Hideki Goda , Shigeo Yoshida , Yukihisa Shimada)

ME00343 (Hideki Goda , Shigeo Yoshida , Yukihisa Shimada)

ME00344 (Hideki Goda , Shigeo Yoshida , Yukihisa Shimada)

ME00352 (Hideki Goda , Yukihisa Shimada)

ME00356 (Takatoshi Kiba , Takeshi Mizuno)

ME00357 (Hideki Goda , Shigeo Yoshida , Tadao Asami , Yukihisa Shimada)

ME00358 (Hideki Goda , Shigeo Yoshida , Tadao Asami , Yukihisa Shimada)

ME00359 (Hideki Goda , Shigeo Yoshida , Tadao Asami , Yukihisa Shimada)

ME00360 (Hideki Goda , Shigeo Yoshida , Tadao Asami , Yukihisa Shimada)

lig: AtGenExpress light treatment

ME00345 (Thomas Kretsch)

str: AtGenExpress stress series 

ME00325 (Cecilia D`Angelo , Joachim Kilian , Joerg Kudla , Oliver Batistic , Stefan Weinl)

ME00326 (Holger Puchta , I-Peng Chen)

ME00327 (Cecilia D`Angelo , Joachim Kilian , Joerg Kudla , Oliver Batistic , Stefan Weinl)

ME00328 (Cecilia D`Angelo , Joachim Kilian , Joerg Kudla , Oliver Batistic , Stefan Weinl)

ME00329 (Jakub Horak , Klaus Harter)

ME00330 (Dierk Wanke , Klaus Harter)

ME00338 (Cecilia D`Angelo , Joachim Kilian , Joerg Kudla , Oliver Batistic , Stefan Weinl)

ME00339 (Lutz Nover , Pascal von Koskull-Döring)

ME00340 (Andrea Ditzer , Dorothea Bartels , Hans-Hubert Kirch)

tis: AtGenExpress development

ME00319 (Detlef Weigel , Jan Lohmann , Markus Schmid)