Supplemental Materials for Tessele et al (2025)

Marker information is included in files 'Sub-Genome-A.hmp.txt', 'Sub-Genome-B.hmp.txt', and 'Sub-Genome-D.hmp.txt', for sub-genomes A, B, and D, respectively. Raw phenotypic data is included in file 'Raw Phenotypes.txt' and across location BLUEs is included in file 'BLUEs.txt'. The Var.R, GS.R and Rank.R are the codes used to estimate the variance components, to run the genomic prediction models, and to rank lines according to sub-genome additive effects, respectively.