Serial Coronal Sections Of An Adult Mouse Brain - Sample Dataset

Experimental data: serial coronal sections of the brain of an adult mouse.

20 um brain sections sampled every 80 um, imaged on an Olympus VS120 slide scanners with a 10x objective

Contains label and overview images and 3 fluorescent channels:

DAPI channel, cell nuclei

FITC channel, autofluorescence

Cy3 channel, fluorescent sparse mCherry labelled cells

This dataset can be used as a test dataset for the Aligning Big Brain and Atlases tool.

Animal handling according to protocols approved by the Swiss animal license VD2808.2

Two zipped QuPath project that are using the OMERO extension are also provided. One contains the full 97 section dataset, one contains a subset of 25 sections. These data are present in the German BioImaging public OMERO instance (https://omero-tim.gerbi-gmb.de).