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HS-1. Comparing Approaches to Achieve Reproducible Computational Modeling for Hydrological and Environmental Systems

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DataONE2023-01-29 更新2024-06-08 收录
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This is a collection resource for \"Comparing containerization-based approaches for reproducible computational modeling of environmental systems\" manuscript in Environmental Modeling and Software Journal. HS-1: Collection Resource for Comparing Approaches to Achieve Reproducible Computational Modeling for Hydrological and Environmental Systems For SUMMA simulation, we created two SUMMA model instances. HS-2. Model Instance for the Impact of Stomatal Resistance Parameterizations on ET of SUMMA Model in Aspen stand at Reynolds Mountain East HS-3. Model Instance for the Impact of Lateral Flow Parameterizations on Runoff of SUMMA Model at Reynolds Mountain East Then there is a HS resource for reproducible approaches in local computational environments. HS-4. A Virtual Box image that includes five local approaches: - Approach-1 Compiling the core model software - Approach-2 Containerizing the core model software only with Docker - Approach-3 Containerizing all software with Docker - Approach-4 Containerizing all software with Singularity - Approach-5 Containerizing all software and modeling workflows with Sciunit Next, there are four HS resources and a GitHub repository for reproducible approaches in remote computational environments. HS-5. Approach-6 Using CUAHSI JupyterHub HS-6. Approach-7 Using CyberGIS-Jupyter for water HS-7. Approach-8 Using Sciunit in CUAHSI JupyterHub HS-8. Approach-9 Using Sciunit in CyberGIS-Jupyter for water Git-1. Approach-10 Using Binder (https://github.com/uva-hydroinformatics/SUMMA_Binder.git) Lastly, we created a notebook for performance tests using the different reproducible approaches. HS-9. Jupyter notebook for performance test using the different reproducible approaches For additional description, we created two GitHub repositories to show how to create Docker and Singularity image for Approach-2,3, and 4. Git-2. Description of Approach-3 to show how to create Docker environments (https://github.com/uva-hydroinformatics/SUMMA_Docker_Training.git) Git-3. Description of Approach-4 to show how to use a Singularity image (https://github.com/uva-hydroinformatics/SUMMA_Singularity_In_Rivanna.git) As a result, we shared a created Singularity image for a model program resource. HS-10: A singularity image for the reproducibility of SUMMA modeling
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2023-12-30
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