Figure3

Data to create figure 3: Comparing independent datasets using SCA pseudo-bulk. A) Pearson similarity matrix generated comparing RNA-5c (X1-5) and RNA-3c (Y1-4) clusters, together with the bulk cell lines transcriptome. Black arrows associate clusters on the basis higher similarity depicted among clusters. B) Seaurat integration table. On the colums are shown the integration clusters and on the rows the number of cells from each RNA-5c and RNA-3c cluster present in the integration clusters. C) UMAP plot of the Seurat integrated clusters. Cell line association is given by the hierarchical clustering shown in Figure 2. Y1 cell line association is indicated with a questin mark since by Figure 2D, Y1 seems to be associated to H1975, as instead by seurat integration and SCA pseudo bulk Y1 is more similar to HCC827 than to H1975Figure 3A somewhere_in_your_computer/fig3/psbulk_integration/old_psAE/c5c3.pngFigure 3Csomewhere_in_your_computer/fig3/seurat_integration/Rplots.pdf