Additional file 1 of Identification of candidate regulatory genes for intramuscular fatty acid composition in pigs by transcriptome analysis

Additional file 1: Table S1. Title: Manual list with functional annotation and plausible function in different aspects of the FA, lipid, and carbohydrate metabolism. Description: This list was compiled based on ClueGO results for selected genes from rCCA. Table S2. Title: Trained list containing genes associated with lipid and/or carbohydrate metabolism in lipogenic tissues (adipose, liver and muscle-skeletal) and obtained from the GUILDify tool. Description: This procedure uses the BIANA knowledge database to create a species-specific interaction network for each gene detected. Here, the netcombo prioritization algorithm based on network topology, and the highest guild score for the top 100 gene products (with only seed) were considered to constitute the trained list. Table S3. Title: List of all transcription factors (TF) and TF cofactors for the Sus scrofa specie obtained from the AnimalTFDB v3.0 database. Description: This resource is also available at: http://bioinfo.life.hust.edu.cn/AnimalTFDB/#!/ .