Top causal paths reported in real data analysis that localized within GWAS regions for 8 autoimmune diseases.

For each path, we report the chromosome, the RSID of the implicated SNP, the implicated mark type, the posterior probability we assigned to this path, three Z-scores (SNP to mark association, mark to expression association, SNP to expression association), the GENCODE gene around which this region was centered, the ChromHMM [24] annotation for the SNP, and the number of regulatory motifs altered by the SNP, as designated by HaploReg [25].