EGP Mitochondrial Genome Analysis on Gambian Genome Variation Project Whole-Genome Sequencing Data

Summary: This dataset consists of running EGP version 1.3 on whole-genome sequencing data from the GGVP. The link to EGP is here https://github.com/tycheleturner/ElGenomaPequeno.

Author: Tychele N. Turner, Ph.D.

Short Writeup: EGP version 1.3 on Gambian Genome Variation Project: Short-read WGS CRAM files were downloaded from the EMBL-EBI Public Data Globus Endpoint from the /1000g/ftp/data_collections directory. Post-download, the data was run through EGP version 1.3. The results are shown below:

Public Dataset
EGP Result File Type
MD5

Gambian Genome Variation Project
Mitochondrial Genome Fasta Files for MEGA
d21e1e91e8b4c00627171fae79a1f54d

Gambian Genome Variation Project
Mitochondrial Genome MitoMaster Result File
b359d1068d4f84f7746d1ebde82df29a

Gambian Genome Variation Project
Mitochondrial Genome Variant Tables
ee2b93aa93d2177d92ec0f8f308b43ed

Gambian Genome Variation Project
Mitochondrial Genome Copy Number
fda509ba1d2bf33fd2d6b77b92e76c03

Please note: I have found that with Zenodo you must use "Download All" for the copy number table to properly open.