MIntO - Tutorial

MIntO tutorial. Subset of 10 human gut microbiome samples, matching Illumina metagenomic (<strong>metaG</strong>) and metatranscriptomic (<strong>metaT</strong>) data, to illustrate the use of MIntO. The subset of 10 metagenomes from the Inflammatory Bowel Disease Multi’omics Database (IBDMDB) correspond to two participants with Crohn’s disease (<code>CD1</code> and <code>CD2</code>). - Samples from <code>CD1</code>: CD136, CD138, CD140, CD142, CD146. - Samples from <code>CD2</code>: CD237, CD238, CD240, CD242 and CD244. There are two files: - IBD_tutorial_raw.tar.gz comprises the raw reads to run this tutorial! This samples have been filtered from the original ones and only include reads matching to 5 genomes (<em>Faecalibacterium prausnitzii</em>, <em>Parabacteroides distasonis</em>, <em>Bacteroides fragilis</em>, <em>Ruminococcus bromii</em> and <em>Bacteroides_uniformis</em>) - IBD_tutorial_output.tar.gz` comprises the output, after running MIntO.