Additional file 2 of Spatial and single-cell expression analyses reveal complex expression domains in early wheat spike development

Additional file 2: Table S1. Gene symbols and identification numbers. Table S2. smFISH cell cluster names and preferential expression. Table S3. Correlations among spatial expression clusters. Table S4. Characterization of stem length and diameter in lfy mutants. Table S5. Differences in hybridization density in the terminal meristems. Table S6. Phenotypic analysis of spl14 CRISPR-induced mutants. Table S7. Description of the scRNA-seq libraries. Table S8. Correlation matrix among single-cell clusters. Table S9. Genes preferentially expressed in the different single-cell clusters. Table S10. KEGG enriched pathways in each cluster. Table S11. Differential expression among basal, central and tip spike regions. Table S12. Projection of smFISH cluster IDs into scRNA-seq cells. Table S13. Correlations scRNA-seq & smFISH-hexaploid at double ridge. Table S14. Correlations scRNA-seq & smFISH-hexaploid at lemma primordia. Table S15. Correlations scRNA-seq & smFISH-hexaploid at terminal spikelet. Table S16. Annotation of single cell clusters. Table S17. Genes preferentially expressed in single-cell epidermal clusters. Table S18. Comparison of subclusters sc18_1and sc18_2. Table S19. Distribution of genes potentially effected by protoplasting. Table S20. Genes co-expressed with FZP-A. Table S21. Genes co-expressed with TCP-A24. Table S22. Network analysis of genes co-expressed with FZP and TCP24. Table S23. Genes co-expressed with ULTRAPETALA-A1. Table S24. Genes co-expressed with AGL-A6. Table S25. Guide RNA sequences and primers for SPL14 and FZP validation.