Alzheimer's disease-induced phagocytic microglia express specific profile of coding and non-coding RNAs

This repository contains the data and the code used in Flavia's project.

A folder can contain the starting raw data in "data", the R scripts in order of execution (op1, op2 ..) and the "output" folder that contains the final processed data of each operation.

"BV2_analysis" contains the processing and analysis of the bulk RNA sequencing data with the different miRNAs in study

"BV2_fastq_nfcore" contains the results of processing the fasta sequences with nfcore rnaseq workflow

"Proinf_analysis" contains the analysis of the external bulk RNA sequencing data with the different studies of proinflammatory microglial cells

"Spatial_data_analysis" contains the raw data of the spatial sequencing, the assempbly of the spatial expression profiles starting from the DAPI images and the transcripts coordinates, the analysis performed on the data

"Spatial_U_scRNA_analysis" contains the code that integrates the spatial sequencing with the scRNA sequencing, plus the code of the analysis